SBIR-STTR Award

Fluorescent Aptamer Test Strips for Food Safety Testing
Award last edited on: 3/31/2021

Sponsored Program
SBIR
Awarding Agency
USDA
Total Award Amount
$539,844
Award Phase
2
Solicitation Topic Code
8.5
Principal Investigator
John G Bruno

Company Information

Operational Technologies Corporation (AKA: Performance Metrics Inc~OPTECH)

4100 Nw Loop 410 Suite 230
San Antonio, TX 78229
   (210) 926-8888
   service@otcorp.com
   www.otcorp.com
Location: Multiple
Congr. District: 20
County: Bexar

Phase I

Contract Number: ----------
Start Date: ----    Completed: ----
Phase I year
2013
Phase I Amount
$99,977
Most commercially available antibody-based test strips for the detection of foodborne pathogenic bacteria are rapid (work in minutes), but not very sensitive. Operational Technologies Corporation (OpTech) aims to improve the sensitivity of such test strips by using higher affinity and more specific DNA aptamers in place of the antibodies. In addition, OpTech will couple its aptamer-based test strips to fluorescent nanoparticles (FNPs) or quantum dots (QDs) because these have been shown to increase the visual sensitivity of test strips about ten-fold when an ultraviolet penlight is used as the fluorescence excitation source. OpTech will develop as many test strip prototypes as it can in Phase 1 using its existing patent-pending (U.S. patent application no. 13/136,820)DNA aptamer library for foodborne pathogens and toxins. OpTech will also develop new aptamers against the so called "Big 6" non-O157 E. coli which are known to cause disease and are now mandated for testing by the USDA. Finally, OpTech will investigate the use of its new Big 6 E. coli aptamers in fluorescent test strips. The end result of this research and development effort should be more sensitive foodborne pathogen and biotoxin detection in the popular and portable test strip format using fluorescence detection, leading to a safer food supply.

Phase II

Contract Number: ----------
Start Date: ----    Completed: ----
Phase II year
2015
Phase II Amount
$439,867
The lateral flow (LF) or immunochromatographic (IC) test strip is a staple test format in the food safety testing arsenal. However, the sensitivity of LF assays is limited partly due to antibody affinity and partly due to the visual detection limit of colloidal gold or colored latex particles. Operational Technologies Corporation (OpTech) has developed hundreds of high affinity candidate DNA aptamers against foodborne pathogenic bacterial surface markers such as E. coli intimins (eae gene products), O157 LPS, Campylobacter and Salmonella surface proteins, Listeria flagellin proteins and Listeriolysin O (LLO) many of which it has patented, published and now sells on its website (www.OTCBiotech.com). In Phase 1, OpTech developed and screened longer (200 base) "multivalent" DNA aptamers containing several of its highest affinity aptamer sequences by ELISA-like (ELASA) microplate assay. These lengthier aptamers appear to have enhanced avidity and specificity versus the older 72 base aptamers in preliminary ELASA screening. OpTech developed the new 200 base aptamers with USDA SBIR funding against the "Big 6" non-O157 Shiga-toxin producing E. coli (STEC) serogroups of lipopolysaccharides (LPS; O26, O45, O103, O111, O121, and O145) and has begun to incorporate these into LF strips having multiple detection lines per strip to help satisfy the new USDA requirement for "Big 6" non-O157 STEC detection. As a preliminary demonstration of how aptamer LF test strips could work, during Phase 1, OpTech screened a number of general botulinum toxin, Campylobacter, E. coli, Listeria, and Salmonella aptamer sandwich pairs in LF test strip formats using both colloidal gold and red quantum dots (Qdot 655). Promising aptamer pairs were identified for most of these analytes and the best studied E. coli system produced a limit of detection (LOD) of about 3,000 cells/test by colloidal gold and < 300 cells by Qdot 655-aptamer-based LF visual tests under a UV light. This work was published by Bruno in the open access journal Pathogens 3:341-355, 2014. Due to this clear enhancement of sensitivity via the use of red Qdots and aptamers, OpTech wishes to fully develop a whole line of fluorescent Qdot-aptamer food borne pathogen LF test strips for commercialization via direct sales and/or product licensing to larger companies. OpTech is currently working with a food safety industry consultant (www.XgeneX.com) to develop partnering relationships and/or licensing deals. The broader impacts of this SBIR project will include enhanced food safety for the public as well as better on-site decision making ability for food processing and packing facilities to decide if foods can be sold or should be discarded. In addition, aptamer-based fluorescent LF test strips can be developed to detect a broad array of clinical, veterinary, environmental pollutant or other analytes. Initially, food processors will be OpTech's main customers. However, the customer base could expand dramatically as OpTech moves fluorescent aptamer-LF test strip technology into the homeland security and medical arenas to detect chemical and biological terrorist threat agents, infectious diseases in hospitals, patient wounds or contaminated raw materials in pharmaceutical production facilities, etc.