SBIR-STTR Award

Peripherally restricted a2/d-1 subunit ligands that modulate CaV channel gating as novel antiarrhythmic drugs
Award last edited on: 12/29/2023

Sponsored Program
SBIR
Awarding Agency
NIH : NHLBI
Total Award Amount
$1,189,877
Award Phase
2
Solicitation Topic Code
837
Principal Investigator
Uwe Klein

Company Information

Numerate Inc

1501 Mariposa Street Suite 426
San Francisco, CA 94107
   (650) 472-0632
   N/A
   www.numerate.com
Location: Single
Congr. District: 07
County: San Francisco

Phase I

Contract Number: 1R43HL139143-01
Start Date: 8/1/2017    Completed: 1/31/2018
Phase I year
2017
Phase I Amount
$224,927
Sudden Cardiac Death (SCD) caused by ventricular tachycardias and fibrillation (VT/VF) is a major world-­wide health problem claiming the lives of some 300,000 Americans each year. Current antiarrhythmic drug (AAD) therapy to control VT/VF is largely empirical and poorly efficacious with considerable risk of proarrhythmic effects. There remains considerable unmet need for new, safe and effective AADs that specifically target the electrophysiological underpinnings of VT/VF without compromising cardiac function. Our goal is to discover and develop a small molecule antiarrhythmic drug that will address this need. Members of the Cardiovascular Research Laboratory at UCLA, Drs. Hrayr Karagueuzian and Riccardo Olcese, have recently advanced our understanding of the functional regulation of the voltage dependent calcium channel CaV1.2 by the a2d-­1 subunit, and how modulation of CaV1.2 gating can reduce VT/VF triggered by early afterdepolarizations (EADs). They have also demonstrated the effect of gabapentinoids as CaV1.2 channel gating modifiers, and with this uncovered their potential therapeutic application as AADs. However, while efficacious, gabapentinoids also produce undesirable centrally mediated side effects that must be avoided in a well-­tolerated chronically dosed AAD. This goal can be achieved through the design of peripherally restricted a2d-­1 ligands, i.e., compounds that are orally bioavailable but not centrally penetrant, which we aim to discover. In preliminary work, Numerate has built predictive computational models for binding to a2d-­1 and for being a substrate for the drug efflux pump P-­glycoprotein (P-­gp). These models will allow us to efficiently identify compounds that are likely to be peripherally restricted, high-­affinity ligands for the gabapentinoid site on a2d-­1. An initial in silico screen of 9 million commercially available compounds identified a series of compounds that are predicted to be ligands for the a2d channel subunit, and that also have a high likelihood of being peripherally restricted. We will select compounds from this screen for testing. In this SBIR grant proposal Numerate proposes to collaborate with Drs. Hrayr Karagueuzian and Riccardo Olcese at the UCLA Cardiovascular Research Laboratory in order to (1.) discover high-­affinity, peripherally restricted a2d-­1 ligands, and (2.) demonstrate their ability to modulate CaV1.2 channel gating and suppress EAD-­triggered VT/VF in cell based assays and an isolated intact heart model.

Public Health Relevance Statement:
Narrative The ultimate objective of the proposed project is to develop a small molecule drug that will address the need for a novel well-tolerated antiarrhythmic therapy for the treatment and prevention of ventricular tachycardias and fibrillation (VT/VF). By modulating gating of the voltage dependent calcium channel CaV1.2, this drug is expected to suppress early afterdepolarizations and prevent VT/VF with no adverse effects on cardiac function or centrally mediated side effects.

Project Terms:
Active Biological Transport; Address; Adverse effects; Affinity; American; Amino Acid Transport System A; Amino Acids; Anti-Arrhythmia Agents; Applications Grants; Back; base; Binding; Bioavailable; Biological Assay; Blood - brain barrier anatomy; Blood Circulation; Caco-2 Cells; Calcium Channel; Cardiac; Cardiovascular system; Cause of Death; Cells; Chronic; Classification; Computer Simulation; Death, Sudden, Cardiac; design; Dizziness; Dose; Drug Efflux; efflux pump; Electrophysiology (science); Goals; Health; Heart; Human; In Vitro; in vivo; intraperitoneal; Knowledge; Laboratory Research; Ligands; Mediating; member; Memory Loss; Modeling; Mus; Muscle Cells; novel; novel therapeutics; Oral; Oryctolagus cuniculus; Oxidative Stress; P-Glycoprotein; patch clamp; Performance; Peripheral; Pharmaceutical Preparations; Pharmacotherapy; predictive modeling; prevent; Prevention; Preventive; Property; Pump; radioligand; Rattus; Regulation; Risk; screening; Sedation procedure; Series; Site; Small Business Innovation Research Grant; small molecule; Testing; Therapeutic; Ventricular; Ventricular Fibrillation; Ventricular Tachycardia; virtual; voltage; Work; Xenopus oocyte

Phase II

Contract Number: 2R44HL139143-02
Start Date: 8/1/2019    Completed: 7/31/2021
Phase II year
2019
Phase II Amount
$964,950
Sudden Cardiac Death (SCD) caused by ventricular tachycardias and fibrillation (VT/VF) is a major world-wide health problem, claiming the lives of some 300,000 Americans each year. Current antiarrhythmic drug (AAD) therapy to control VT/VF is largely empirical and poorly efficacious with considerable risk of proarrhythmic effects. There remains considerable unmet need for new, safe and effective AADs that specifically target the electrophysiological underpinnings of VT/VF without compromising cardiac function. Our goal is to discover and develop a small molecule antiarrhythmic drug that will address this need. Members of the Cardiovascular Research Laboratory (CVRL) at UCLA, Drs. Hrayr Karagueuzian and Riccardo Olcese, have recently advanced our understanding of the functional regulation of the voltage dependent calcium channel CaV1.2 by the ?2?-1 subunit, and how modulation of CaV1.2 gating can reduce VT/VF triggered by early afterdepolarizations (EADs). They have also demonstrated the effect of gabapentinoids as CaV1.2 channel gating modifiers, and with this uncovered their potential therapeutic application as AADs. However, while efficacious, gabapentinoids also produce undesirable centrally mediated side effects that must be avoided in a well-tolerated chronically dosed AAD. This goal can be achieved through the design of peripherally restricted ?2?-1 ligands, i.e., compounds that are orally bioavailable but not centrally penetrant, which we aim to discover. Under Phase I SBIR funding and through use of our computational drug discovery platform, we identified two novel lead compounds that 1) bind to the ?2? subunit of the CaV1.2 channel complex with high affinity; 2) are substrates for the P-glycoprotein (P-gp) efflux pump; 3) have high plasma:brain concentration ratios in the mouse indicative of peripheral restriction; 4) suppress oxidative stress induced EADs in rabbit cardiomyocytes in vitro; and 5) convert oxidative stress induced VT/VF to sinus rhythm in a perfused isolated rat heart preparation. Having met the milestones for the Phase I program positions us to undertake the project described in this Phase II application: lead identification and optimization studies directed toward nomination of two Advanced Candidates for exploratory preclinical safety studies. The proposed work will further leverage our predictive modeling capabilities and focus on designing compounds that in addition to being potent for binding to the ?2? subunit have favorable pharmacokinetic properties including the combination of oral bioavailability and peripheral restriction; clean off-target profiles including limited interaction with safety-relevant cardiac ion channels; demonstrated anti-arrhythmic efficacy in the rabbit cardiomyocyte and isolated rat heart models of our collaborators at the UCLA CVRL; and demonstrated favorable effects on EADs and VT/VF without negative impact on contractility in an innovative iPSC-derived cardiomyocyte-based, matured human cardiac tissue model (Biowire™ II) developed by TARA Biosystems.

Public Health Relevance Statement:
NARRATIVE The ultimate objective of the proposed project is to develop a small molecule drug that will address the need for a novel well-tolerated antiarrhythmic therapy for the treatment and prevention of ventricular tachycardias and fibrillation (VT/VF). By modulating gating of the voltage dependent calcium channel CaV1.2, this drug is expected to suppress early afterdepolarizations and prevent VT/VF with no adverse effects on cardiac function or centrally mediated side effects.

Project Terms:
3-Dimensional; Address; Adverse effects; Affect; Affinity; American; Anti-Arrhythmia Agents; base; Binding; Bioavailable; Biological Assay; Biological Availability; Brain; Calcium Channel; Calcium Channel Blockers; Cardiac; Cardiac Myocytes; Cardiovascular system; Cause of Death; Cells; Chronic; clinical candidate; Complex; Computer Simulation; design; Dizziness; Dose; drug discovery; Drug Exposure; Drug Kinetics; efflux pump; Electrophysiology (science); Enzymes; Funding; Goals; Health; Heart; heart function; Human; human tissue; In Vitro; in vitro Model; in vivo; induced pluripotent stem cell; innovation; Ion Channel; Knowledge; Laboratory Research; Lead; lead optimization; Ligands; Mediating; member; Memory Loss; Metabolic; Modeling; Mus; Muscle Cells; novel; novel lead compound; novel therapeutics; Oral; Oryctolagus cuniculus; Output; Oxidative Stress; P-Glycoprotein; patch clamp; Peripheral; Pharmaceutical Preparations; Pharmacotherapy; Phase; Physiological; Plasma; Poison; Positioning Attribute; preclinical safety; predictive modeling; Preparation; prevent; Prevention; programs; Property; radioligand; Rattus; receptor; Regulation; Research; Risk; Safety; safety study; screening; Sedation procedure; Series; side effect; Sinus; Small Business Innovation Research Grant; small molecule; sudden cardiac death; Testing; Therapeutic; Tissue Model; Tissues; Ventricular; Ventricular Fibrillation; Ventricular Tachycardia; Verapamil; voltage; Work; Xenopus oocyte