SBIR-STTR Award

Miniature, Integrated Fluorescence Microscopes for in Vivo Brain Imaging
Award last edited on: 1/16/2019

Sponsored Program
SBIR
Awarding Agency
NIH : NIMH
Total Award Amount
$3,598,423
Award Phase
2
Solicitation Topic Code
-----

Principal Investigator
Kunal Ghosh

Company Information

Inscopix Inc

2462 Embarcadero Way
Palo Alto, CA 94303
   (650) 600-3886
   info@inscopix.com
   www.inscopix.com
Location: Single
Congr. District: 18
County: Santa Clara

Phase I

Contract Number: 1R43MH095332-01A1
Start Date: 8/1/2012    Completed: 7/31/2014
Phase I year
2012
Phase I Amount
$323,300
There is a rising emphasis today on the role of neural circuitry in neuropsychiatric disease. However we still lack crucial knowledge of both normal patterns of neural activity and how these patterns go awry in disease. Although brain researchers have already created mouse models of many human brain diseases, presently there is no technology that can visualize the activity of large numbers of individual, neurons of genetically identified types in the brains of behaving mice - ideally in multiple mice in parallel. The capacity to obtain such large-scale data sets is important towards identifying neurophysiologic signatures of brain disease and is a prerequisite for developing therapeutic means of re-tuning aberrant activity patterns. Fluorescence microscopy has key advantages for tracking neural activity. However, while conventional fluorescence microscopes offer the spatiotemporal resolution needed for imaging the brain's cellular dynamics, they neither permit studies in freely behaving mice nor are scalable for studies of large numbers of animal subjects. If fluorescence microscopes could be made small, portable, and cheap, then in principle large numbers of behaving mice could be studied in parallel. Inscopix, Inc. has spun-out of Stanford University to commercialize miniature, integrated fluorescence microscopes - imaging technology that helps neuroscientists visualize neural circuit dynamics in awake behaving mice and rats. Prototype microscopes at Stanford are already enabling imaging of cerebellar microcirculation and permitting visualization of Ca2+ dynamics within hundreds of individual neurons (over weeks in some experiments) as the animal behaves freely in a naturalistic manner. The core miniature, integrated microscope technological innovation and its promise for studying the brain and its diseases was recently featured in Nature, MIT Technology Review, and several media outlets. In Phase I Inscopix aims to develop and test a new set of prototype microscopes that are significantly higher-performing, robust and part of a user-friendly end-to-end solution for in vivo brain imaging in freely behaving rodents. Specifically, we will: (1) Desig and create a new version of our miniaturized, integrated microscope. We will further develop the core technology and incorporate several improvements to significantly enhance imaging performance and extend the capabilities for in vivo brain imaging, including: (a) Attaining spatial resolution finer than 1 ¿m over fields-of-view up to 1 mm2; (b) Developing a digital, high-speed rotary commutator enabling unsupervised, imaging studies of brain activity; (c) Creating a robust and reliable microscope housing suitable for low-cost manufacturing in large volumes. (2) Develop accompanying hardware and software for data acquisition and processing. We will create a compact and user-friendly USB-compatible box for image acquisition and microscope control along with an easy-to-use Graphical User Interface (GUI). (3) Fabricate and test 10 new miniature microscopes with accompanying peripherals. We will fabricate and internally test our new designs before distributing 10 prototypes to carefully chosen beta labs for in vivo testing and validation. By the end of Phase I we expect to have received considerable in vivo usage feedback from beta labs, laying the foundation for volume production and roll-out of a market-ready product in Phase II.

Public Health Relevance:
Modern understanding of brain disease is currently undergoing a sea change, gradually shifting away from theories that emphasize a dearth or excess of neurotransmitter, and towards more sophisticated theories in which neurons of specific types exhibit improper patterns of ensemble activity underlying aberrant human behavior. This shift is especially important for disorders such as autism, which defy simple neurochemical explanations and appear to arise from circuit-level abnormalities; for disorders for which there has been much evidence to support roles for altered neurochemistry, such as schizophrenia or depression, there is rising appreciation for the equally important roles of pathologic neural circuit dynamics in causing disease phenotypes. Inscopix will develop and commercialize an innovative imaging technology for visualizing neural activity in behaving mice - and in principle, across large numbers of subjects in parallel - helping researchers obtain some of the missing knowledge about normal and aberrant neural activity patterns in mouse models of human brain disease, a key step towards developing novel therapeutics and corrective strategies.

Public Health Relevance Statement:
Modern understanding of brain disease is currently undergoing a sea change, gradually shifting away from theories that emphasize a dearth or excess of neurotransmitter, and towards more sophisticated theories in which neurons of specific types exhibit improper patterns of ensemble activity underlying aberrant human behavior. This shift is especially important for disorders such as autism, which defy simple neurochemical explanations and appear to arise from circuit-level abnormalities; for disorders for which there has been much evidence to support roles for altered neurochemistry, such as schizophrenia or depression, there is rising appreciation for the equally important roles of pathologic neural circuit dynamics in causing disease phenotypes. Inscopix will develop and commercialize an innovative imaging technology for visualizing neural activity in behaving mice - and in principle, across large numbers of subjects in parallel - helping researchers obtain some of the missing knowledge about normal and aberrant neural activity patterns in mouse models of human brain disease, a key step towards developing novel therapeutics and corrective strategies.

NIH Spending Category:
Bioengineering; Brain Disorders; Diagnostic Radiology; Mental Health; Neurosciences

Project Terms:
Adult; American; Animal Behavior; Animals; Area; Autistic Disorder; awake; base; Behavior; Boxing; Brain; Brain Diseases; Brain imaging; brain research; Cells; Chronic; commercialization; Communities; Computer software; computerized data processing; Core Facility; Corpus striatum structure; cost; Custom; Data; data acquisition; Data Set; design; Devices; digital; Disease; disease phenotype; electronic data; Electronics; Elements; Exhibits; Extravasation; Feedback; flexibility; fluorescence microscope; Fluorescence Microscopy; Foundations; Goals; graphical user interface; Head; Hippocampus (Brain); Home environment; Housing; Human; Image; image registration; Imagery; Imaging technology; improved; in vivo; Individual; innovation; Intellectual Property; interest; Knowledge; lens; Letters; Licensing; Life; Light; Location; Magnetism; Marketing; Medicine; member; Mental Depression; Methods; Microcirculation; Microscope; miniaturize; Monitor; mouse model; Mus; National Institute of Mental Health (U.S.); Nature; neural circuit; neural patterning; neurochemistry; Neurons; neuropsychiatry; Neurosciences; Neurosciences Research; Neurotransmitters; news; novel therapeutics; Optics; Pathologic; Pathway interactions; Pattern; Performance; Peripheral; Phase; Preparation; Problem Solving; Production; prototype; Publishing; Rattus; relating to nervous system; Research Personnel; research study; Resolution; Rodent; Role; Schizophrenia; Scientist; Sea; seal; sensor; Shapes; Small Business Innovation Research Grant; Solutions; Source; spatiotemporal; Speed (motion); Staging; Stream; technological innovation; Technology; Testing; theories; Therapeutic; Time; Universities; user-friendly; Validation

Phase II

Contract Number: 5R43MH095332-02
Start Date: 8/1/2012    Completed: 7/31/2014
Phase II year
2013
(last award dollars: 2018)
Phase II Amount
$3,275,123

There is a rising emphasis today on the role of neural circuitry in neuropsychiatric disease. However we still lack crucial knowledge of both normal patterns of neural activity and how these patterns go awry in disease. Although brain researchers have already created mouse models of many human brain diseases, presently there is no technology that can visualize the activity of large numbers of individual, neurons of genetically identified types in the brains of behaving mice - ideally in multiple mice in parallel. The capacity to obtain such large-scale data sets is important towards identifying neurophysiologic signatures of brain disease and is a prerequisite for developing therapeutic means of re-tuning aberrant activity patterns. Fluorescence microscopy has key advantages for tracking neural activity. However, while conventional fluorescence microscopes offer the spatiotemporal resolution needed for imaging the brain's cellular dynamics, they neither permit studies in freely behaving mice nor are scalable for studies of large numbers of animal subjects. If fluorescence microscopes could be made small, portable, and cheap, then in principle large numbers of behaving mice could be studied in parallel. Inscopix, Inc. has spun-out of Stanford University to commercialize miniature, integrated fluorescence microscopes - imaging technology that helps neuroscientists visualize neural circuit dynamics in awake behaving mice and rats. Prototype microscopes at Stanford are already enabling imaging of cerebellar microcirculation and permitting visualization of Ca2+ dynamics within hundreds of individual neurons (over weeks in some experiments) as the animal behaves freely in a naturalistic manner. The core miniature, integrated microscope technological innovation and its promise for studying the brain and its diseases was recently featured in Nature, MIT Technology Review, and several media outlets. In Phase I Inscopix aims to develop and test a new set of prototype microscopes that are significantly higher-performing, robust and part of a user-friendly end-to-end solution for in vivo brain imaging in freely behaving rodents. Specifically, we will: (1) Desig and create a new version of our miniaturized, integrated microscope. We will further develop the core technology and incorporate several improvements to significantly enhance imaging performance and extend the capabilities for in vivo brain imaging, including: (a) Attaining spatial resolution finer than 1 ¿m over fields-of-view up to 1 mm2; (b) Developing a digital, high-speed rotary commutator enabling unsupervised, imaging studies of brain activity; (c) Creating a robust and reliable microscope housing suitable for low-cost manufacturing in large volumes. (2) Develop accompanying hardware and software for data acquisition and processing. We will create a compact and user-friendly USB-compatible box for image acquisition and microscope control along with an easy-to-use Graphical User Interface (GUI). (3) Fabricate and test 10 new miniature microscopes with accompanying peripherals. We will fabricate and internally test our new designs before distributing 10 prototypes to carefully chosen beta labs for in vivo testing and validation. By the end of Phase I we expect to have received considerable in vivo usage feedback from beta labs, laying the foundation for volume production and roll-out of a market-ready product in Phase II.

Public Health Relevance Statement:
Modern understanding of brain disease is currently undergoing a sea change, gradually shifting away from theories that emphasize a dearth or excess of neurotransmitter, and towards more sophisticated theories in which neurons of specific types exhibit improper patterns of ensemble activity underlying aberrant human behavior. This shift is especially important for disorders such as autism, which defy simple neurochemical explanations and appear to arise from circuit-level abnormalities; for disorders for which there has been much evidence to support roles for altered neurochemistry, such as schizophrenia or depression, there is rising appreciation for the equally important roles of pathologic neural circuit dynamics in causing disease phenotypes. Inscopix will develop and commercialize an innovative imaging technology for visualizing neural activity in behaving mice - and in principle, across large numbers of subjects in parallel - helping researchers obtain some of the missing knowledge about normal and aberrant neural activity patterns in mouse models of human brain disease, a key step towards developing novel therapeutics and corrective strategies.

NIH Spending Category:
Bioengineering; Brain Disorders; Diagnostic Radiology; Mental Health; Neurosciences

Project Terms:
Adult; American; Animal Behavior; Animals; Area; Autistic Disorder; awake; base; Behavior; Boxing; Brain; Brain Diseases; Brain imaging; brain research; Cells; Chronic; commercialization; Communities; Computer software; computerized data processing; Core Facility; Corpus striatum structure; cost; Custom; Data; data acquisition; Data Set; design; Devices; digital; Disease; disease phenotype; electronic data; Electronics; Elements; Exhibits; Extravasation; Feedback; flexibility; fluorescence microscope; Fluorescence Microscopy; Foundations; Goals; graphical user interface; Head; Hippocampus (Brain); Home environment; Housing; Human; Image; image registration; Imagery; Imaging technology; improved; in vivo; Individual; innovation; Intellectual Property; interest; Knowledge; lens; Letters; Licensing; Life; Light; Location; Magnetism; Marketing; Medicine; member; Mental Depression; Methods; Microcirculation; Microscope; miniaturize; Monitor; mouse model; Mus; National Institute of Mental Health (U.S.); Nature; neural circuit; neural patterning; neurochemistry; Neurons; neuropsychiatry; Neurosciences; Neurosciences Research; Neurotransmitters; news; novel therapeutics; Optics; Pathologic; Pathway interactions; Pattern; Performance; Peripheral; Phase; Preparation; Problem Solving; Production; prototype; Publishing; Rattus; relating to nervous system; Research Personnel; research study; Resolution; Rodent; Role; Schizophrenia; Scientist; Sea; seal; sensor; Shapes; Small Business Innovation Research Grant; Solutions; Source; spatiotemporal; Speed (motion); Staging; Stream; technological innovation; Technology; Testing; theories; Therapeutic; Time; Universities; user-friendly; Validation